PoplarV1, Main, Exploration, bibRecord, 003909

Genome-wide analysis of SINA family in plants and their phylogenetic relationships.

Identifieur interne : 003909 ( Main/Exploration ); précédent : 003908; suivant : 003910

Genome-wide analysis of SINA family in plants and their phylogenetic relationships.

Auteurs : Meng Wang [République populaire de Chine] ; Ying Jin ; Junjie Fu ; Yun Zhu ; Jun Zheng ; Jian Hu ; Guoying Wang

Source :

DNA sequence : the journal of DNA sequencing and mapping [ 1042-5179 ] ; 2008.

RBID : pubmed:17852340

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Motifs (genetics), Amino Acid Sequence (MeSH), Chromosomes, Plant (genetics), Conserved Sequence (genetics), Gene Expression Profiling (MeSH), Gene Order (MeSH), Genes, Plant (genetics), Genome, Plant (genetics), Magnoliopsida (genetics), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Protein Structure, Tertiary (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Sequence Alignment (MeSH).
MESH :
- chemical , chemistry : Plant Proteins.
- genetics : Amino Acid Motifs, Chromosomes, Plant, Conserved Sequence, Genes, Plant, Genome, Plant, Magnoliopsida, Plant Proteins, Protein Structure, Tertiary.
- Amino Acid Sequence, Gene Expression Profiling, Gene Order, Molecular Sequence Data, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment.

Abstract

SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.

DOI: 10.1080/10425170701517317
PubMed: 17852340

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 003A77
to stream Main, to step Curation: 003A77

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-wide analysis of SINA family in plants and their phylogenetic relationships.</title>
<author><name sortKey="Wang, Meng" sort="Wang, Meng" uniqKey="Wang M" first="Meng" last="Wang">Meng Wang</name>
<affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, PR China. wangmeng@cau.edu.cn</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Jin, Ying" sort="Jin, Ying" uniqKey="Jin Y" first="Ying" last="Jin">Ying Jin</name>
</author>
<author><name sortKey="Fu, Junjie" sort="Fu, Junjie" uniqKey="Fu J" first="Junjie" last="Fu">Junjie Fu</name>
</author>
<author><name sortKey="Zhu, Yun" sort="Zhu, Yun" uniqKey="Zhu Y" first="Yun" last="Zhu">Yun Zhu</name>
</author>
<author><name sortKey="Zheng, Jun" sort="Zheng, Jun" uniqKey="Zheng J" first="Jun" last="Zheng">Jun Zheng</name>
</author>
<author><name sortKey="Hu, Jian" sort="Hu, Jian" uniqKey="Hu J" first="Jian" last="Hu">Jian Hu</name>
</author>
<author><name sortKey="Wang, Guoying" sort="Wang, Guoying" uniqKey="Wang G" first="Guoying" last="Wang">Guoying Wang</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2008">2008</date>
<idno type="RBID">pubmed:17852340</idno>
<idno type="pmid">17852340</idno>
<idno type="doi">10.1080/10425170701517317</idno>
<idno type="wicri:Area/Main/Corpus">003A77</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003A77</idno>
<idno type="wicri:Area/Main/Curation">003A77</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003A77</idno>
<idno type="wicri:Area/Main/Exploration">003A77</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-wide analysis of SINA family in plants and their phylogenetic relationships.</title>
<author><name sortKey="Wang, Meng" sort="Wang, Meng" uniqKey="Wang M" first="Meng" last="Wang">Meng Wang</name>
<affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, PR China. wangmeng@cau.edu.cn</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Jin, Ying" sort="Jin, Ying" uniqKey="Jin Y" first="Ying" last="Jin">Ying Jin</name>
</author>
<author><name sortKey="Fu, Junjie" sort="Fu, Junjie" uniqKey="Fu J" first="Junjie" last="Fu">Junjie Fu</name>
</author>
<author><name sortKey="Zhu, Yun" sort="Zhu, Yun" uniqKey="Zhu Y" first="Yun" last="Zhu">Yun Zhu</name>
</author>
<author><name sortKey="Zheng, Jun" sort="Zheng, Jun" uniqKey="Zheng J" first="Jun" last="Zheng">Jun Zheng</name>
</author>
<author><name sortKey="Hu, Jian" sort="Hu, Jian" uniqKey="Hu J" first="Jian" last="Hu">Jian Hu</name>
</author>
<author><name sortKey="Wang, Guoying" sort="Wang, Guoying" uniqKey="Wang G" first="Guoying" last="Wang">Guoying Wang</name>
</author>
</analytic>
<series><title level="j">DNA sequence : the journal of DNA sequencing and mapping</title>
<idno type="ISSN">1042-5179</idno>
<imprint><date when="2008" type="published">2008</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Motifs (genetics)</term>
<term>Amino Acid Sequence (MeSH)</term>
<term>Chromosomes, Plant (genetics)</term>
<term>Conserved Sequence (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Order (MeSH)</term>
<term>Genes, Plant (genetics)</term>
<term>Genome, Plant (genetics)</term>
<term>Magnoliopsida (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Protein Structure, Tertiary (genetics)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
<term>Sequence Alignment (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences (MeSH)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes de plante (génétique)</term>
<term>Génome végétal (génétique)</term>
<term>Magnoliopsida (génétique)</term>
<term>Motifs d'acides aminés (génétique)</term>
<term>Ordre des gènes (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>RT-PCR (MeSH)</term>
<term>Structure tertiaire des protéines (génétique)</term>
<term>Séquence conservée (génétique)</term>
<term>Séquence d'acides aminés (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Amino Acid Motifs</term>
<term>Chromosomes, Plant</term>
<term>Conserved Sequence</term>
<term>Genes, Plant</term>
<term>Genome, Plant</term>
<term>Magnoliopsida</term>
<term>Plant Proteins</term>
<term>Protein Structure, Tertiary</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term>
<term>Gènes de plante</term>
<term>Génome végétal</term>
<term>Magnoliopsida</term>
<term>Motifs d'acides aminés</term>
<term>Protéines végétales</term>
<term>Structure tertiaire des protéines</term>
<term>Séquence conservée</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Gene Expression Profiling</term>
<term>Gene Order</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
<term>Sequence Alignment</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Analyse de profil d'expression de gènes</term>
<term>Données de séquences moléculaires</term>
<term>Ordre des gènes</term>
<term>Phylogenèse</term>
<term>RT-PCR</term>
<term>Séquence d'acides aminés</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17852340</PMID>
<DateCompleted><Year>2008</Year>
<Month>09</Month>
<Day>11</Day>
</DateCompleted>
<DateRevised><Year>2017</Year>
<Month>11</Month>
<Day>16</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Print">1042-5179</ISSN>
<JournalIssue CitedMedium="Print"><Volume>19</Volume>
<Issue>3</Issue>
<PubDate><Year>2008</Year>
<Month>Jun</Month>
</PubDate>
</JournalIssue>
<Title>DNA sequence : the journal of DNA sequencing and mapping</Title>
<ISOAbbreviation>DNA Seq</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-wide analysis of SINA family in plants and their phylogenetic relationships.</ArticleTitle>
<Pagination><MedlinePgn>206-16</MedlinePgn>
</Pagination>
<Abstract><AbstractText>SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Meng</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, PR China. wangmeng@cau.edu.cn</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jin</LastName>
<ForeName>Ying</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Fu</LastName>
<ForeName>Junjie</ForeName>
<Initials>J</Initials>
</Author>
<Author ValidYN="Y"><LastName>Zhu</LastName>
<ForeName>Yun</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Zheng</LastName>
<ForeName>Jun</ForeName>
<Initials>J</Initials>
</Author>
<Author ValidYN="Y"><LastName>Hu</LastName>
<ForeName>Jian</ForeName>
<Initials>J</Initials>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Guoying</ForeName>
<Initials>G</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>EF434382</AccessionNumber>
<AccessionNumber>EF434383</AccessionNumber>
<AccessionNumber>EF434384</AccessionNumber>
<AccessionNumber>EF434385</AccessionNumber>
<AccessionNumber>EF434386</AccessionNumber>
<AccessionNumber>EF434387</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>DNA Seq</MedlineTA>
<NlmUniqueID>9107800</NlmUniqueID>
<ISSNLinking>1026-7913</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D020816" MajorTopicYN="N">Amino Acid Motifs</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D023061" MajorTopicYN="N">Gene Order</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D019684" MajorTopicYN="N">Magnoliopsida</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017434" MajorTopicYN="N">Protein Structure, Tertiary</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2007</Year>
<Month>9</Month>
<Day>14</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2008</Year>
<Month>9</Month>
<Day>13</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2007</Year>
<Month>9</Month>
<Day>14</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">17852340</ArticleId>
<ArticleId IdType="pii">780755879</ArticleId>
<ArticleId IdType="doi">10.1080/10425170701517317</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><noCountry><name sortKey="Fu, Junjie" sort="Fu, Junjie" uniqKey="Fu J" first="Junjie" last="Fu">Junjie Fu</name>
<name sortKey="Hu, Jian" sort="Hu, Jian" uniqKey="Hu J" first="Jian" last="Hu">Jian Hu</name>
<name sortKey="Jin, Ying" sort="Jin, Ying" uniqKey="Jin Y" first="Ying" last="Jin">Ying Jin</name>
<name sortKey="Wang, Guoying" sort="Wang, Guoying" uniqKey="Wang G" first="Guoying" last="Wang">Guoying Wang</name>
<name sortKey="Zheng, Jun" sort="Zheng, Jun" uniqKey="Zheng J" first="Jun" last="Zheng">Jun Zheng</name>
<name sortKey="Zhu, Yun" sort="Zhu, Yun" uniqKey="Zhu Y" first="Yun" last="Zhu">Yun Zhu</name>
</noCountry>
<country name="République populaire de Chine"><noRegion><name sortKey="Wang, Meng" sort="Wang, Meng" uniqKey="Wang M" first="Meng" last="Wang">Meng Wang</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003909 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 003909 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:17852340
   |texte=   Genome-wide analysis of SINA family in plants and their phylogenetic relationships.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:17852340" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020

	Serveur d'exploration sur le peuplier
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur le peuplier

Genome-wide analysis of SINA family in plants and their phylogenetic relationships.

Genome-wide analysis of SINA family in plants and their phylogenetic relationships.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki